diff --git a/.idea/dataSources.xml b/.idea/dataSources.xml
index 380c887..10c878c 100644
--- a/.idea/dataSources.xml
+++ b/.idea/dataSources.xml
@@ -16,5 +16,12 @@
+
+ sqlite.xerial
+ true
+ org.sqlite.JDBC
+ jdbc:sqlite:identifier.sqlite
+ $ProjectFileDir$
+
\ No newline at end of file
diff --git a/Time_Series_Plot.png b/Time_Series_Plot.png
deleted file mode 100644
index 65375bd..0000000
Binary files a/Time_Series_Plot.png and /dev/null differ
diff --git a/templates/page/tools.html b/templates/page/tools.html
index 1eda928..f5a0a3f 100644
--- a/templates/page/tools.html
+++ b/templates/page/tools.html
@@ -131,7 +131,7 @@
temp = $('#main_show')
temp.empty()
temp.append(String.raw`{% include 'tools/blast.html' %}`)
- up_file_blast()
+ blast_run()
form.render();
}
@@ -194,11 +194,17 @@
temp = $('#main_show')
temp.empty()
temp.append(String.raw`{% include 'tools/fastqc.html' %}`)
- up_file("select_file", {})
+ fastqc_run()
form.render();
}
+ // blast
+ function blast_run() {
+
+ }
+
+
// gen to fa
function gen_to_fa() {
layui.use(['upload'], function () {
@@ -464,6 +470,39 @@
}
+ // fastqc
+ function fastqc_run() {
+
+ layui.use(['upload'], function () {
+ var $ = layui.jquery
+ , layer = layui.layer;
+ upload.render({
+ elem: '#select_fastqc'
+ , url: url_up + '/tools/' + "fastqc"
+ , auto: false
+ , accept: 'file'
+ , data: {
+ csrfmiddlewaretoken: '{{ csrf_token }}',
+ format: document.getElementById("format").value,
+ }
+ , before: function (obj) { //obj参数包含的信息，跟 choose回调完全一致，可参见上文。
+ layer.load(1); //上传loading
+ }
+ , bindAction: '#fastqc_run'
+ , done: function (res, index) {
+ layer.closeAll('loading'); //关闭loading
+ ab = '' + ' '
+ $("#down").append(ab)
+ }
+ , error: function (index, upload) {
+ layer.closeAll('loading'); //关闭loading
+ }
+ })
+ ;
+ })
+
+ }
+
diff --git a/templates/tools/fastqc.html b/templates/tools/fastqc.html
index 5dd93b9..5d12db6 100644
--- a/templates/tools/fastqc.html
+++ b/templates/tools/fastqc.html
@@ -18,81 +18,21 @@
-
+
-
-
-
-
-
-
-
-
diff --git a/tools/views.py b/tools/views.py
index 1e44641..20305da 100644
--- a/tools/views.py
+++ b/tools/views.py
@@ -101,6 +101,22 @@ def pfam(request):
return JsonResponse(data)
+def fastqc(request):
+ file = request.FILES.get("file", None)
+ format = request.POST.get("format", None)
+ if format is None:
+ format = "fastq"
+
+ file_path, file_id = tools.path_out("chart")
+ tools.keep_file(file, file_path)
+ data = {"id": file_id}
+ os.mkdir(f"{file_path[:-1]}")
+ os.system(
+ f"{tools.tools_path}/fastqc -o {file_path[:-1]} -f {format} {file_path}")
+ os.system(f"7z a -t7z -r {file_id}.7z {file_path[:-1]}")
+ return JsonResponse(data)
+
+
def Differential_expression_analysis(request):
if request.method == 'POST':
files = request.FILES.getlist('files')