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fixed clang warnings

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This commit is contained in:
Heng Li
2019-12-26 09:40:35 -05:00
parent 907458fad2
commit 03c8899a34
5 changed files with 91 additions and 91 deletions
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Correct.cpp
+14 -14
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@@ -3141,8 +3141,8 @@ long long type, long long edgeID, Cigar_record* current_cigar, char* self_string
else
{
fprintf(stderr, "error type\n");
return -1;
}
}
@@ -3436,14 +3436,14 @@ void print_graph(Graph* DAGCon)
if(If_Node_Exist(*currentStartNode))
{
fprintf(stderr, "ID: %lu (%c) (w: %lu)\n", (*currentStartNode).ID, (*currentStartNode).base, (*currentStartNode).weight);
fprintf(stderr, "ID: %lu (%c) (w: %lu)\n", (unsigned long)(*currentStartNode).ID, (*currentStartNode).base, (unsigned long)(*currentStartNode).weight);
clear_RSet(&iter_out);
Edge* e;
fprintf(stderr, "****Out-node: ");
while(getOutputEdges(&iter_out, DAGCon, currentStartNode, &e))
{
//fprintf(stderr, "%d[%c], ", G_Node(*DAGCon, e->out_node).ID, G_Node(*DAGCon, e->out_node).base);
fprintf(stderr, "%lu(w: %lu), ", G_Node(*DAGCon, e->out_node).ID, e->weight);
fprintf(stderr, "%lu(w: %lu), ", (unsigned long)G_Node(*DAGCon, e->out_node).ID, (unsigned long)e->weight);
}
fprintf(stderr, "\n");
@@ -3483,14 +3483,14 @@ void debug_DAGCon(Graph* DAGCon)
if(Visit(*e_self) == 0)
{
fprintf(stderr, "Visit(*e_self): %lu, error visit flag: in_node: %lu, out_node: %lu\n",
Visit(*e_self), (*e_self).in_node, (*e_self).out_node);
(unsigned long)Visit(*e_self), (unsigned long)(*e_self).in_node, (unsigned long)(*e_self).out_node);
}
if(Visit(*e_reverse) == 0)
{
fprintf(stderr, "Visit(*e_reverse): %lu, error visit flag: in_node: %lu, out_node: %lu\n",
Visit(*e_reverse), (*e_reverse).in_node, (*e_reverse).out_node);
(unsigned long)Visit(*e_reverse), (unsigned long)(*e_reverse).in_node, (unsigned long)(*e_reverse).out_node);
}
@@ -3518,14 +3518,14 @@ void debug_DAGCon(Graph* DAGCon)
if(Visit(*e_self) == 0)
{
fprintf(stderr, "Visit(*e_self): %lu, error visit flag: in_node: %lu, out_node: %lu\n",
Visit(*e_self), (*e_self).in_node, (*e_self).out_node);
(unsigned long)Visit(*e_self), (unsigned long)(*e_self).in_node, (unsigned long)(*e_self).out_node);
}
if(Visit(*e_reverse) == 0)
{
fprintf(stderr, "Visit(*e_reverse): %lu, error visit flag: in_node: %lu, out_node: %lu\n",
Visit(*e_reverse), (*e_reverse).in_node, (*e_reverse).out_node);
(unsigned long)Visit(*e_reverse), (unsigned long)(*e_reverse).in_node, (unsigned long)(*e_reverse).out_node);
}
@@ -3958,7 +3958,7 @@ void debug_whole_graph(Graph* g)
g->g_nodes.list[i].deletion_edges.length!= 1)
{
fprintf(stderr, "g->g_nodes.list[i].deletion_edges.length: %lu\n",
g->g_nodes.list[i].deletion_edges.length);
(unsigned long)g->g_nodes.list[i].deletion_edges.length);
}
}
@@ -3969,7 +3969,7 @@ void debug_whole_graph(Graph* g)
g->g_nodes.list[i].mismatch_edges.length < 1)
{
fprintf(stderr, "g->s_end_nodeID: %lu, g->g_nodes.list[%lld].mismatch_edges.length: %lu\n",
g->s_end_nodeID, i, g->g_nodes.list[i].mismatch_edges.length);
(unsigned long)g->s_end_nodeID, i, (unsigned long)g->g_nodes.list[i].mismatch_edges.length);
}
}
@@ -5928,7 +5928,7 @@ void print_core_snp(haplotype_evdience_alloc* hap)
for (i = 0; i < hap->core_snp; i++)
{
fprintf(stderr, "core(i): %lu, site: %u, occ_0: %u, occ_1: %u, occ_2: %u, score: %d\n",
i, hap->snp_stat[i].site, hap->snp_stat[i].occ_0, hap->snp_stat[i].occ_1,
(unsigned long)i, hap->snp_stat[i].site, hap->snp_stat[i].occ_0, hap->snp_stat[i].occ_1,
hap->snp_stat[i].occ_2,
hap->snp_stat[i].score);
@@ -5939,7 +5939,7 @@ void print_core_snp(haplotype_evdience_alloc* hap)
{
if(vector[j] == 0)
{
fprintf(stderr, "type: %d, ID: %lu\n", vector[j], j);
fprintf(stderr, "type: %d, ID: %lu\n", vector[j], (unsigned long)j);
}
}
@@ -5948,7 +5948,7 @@ void print_core_snp(haplotype_evdience_alloc* hap)
{
if(vector[j] == 1)
{
fprintf(stderr, "type: %d, ID: %lu\n", vector[j], j);
fprintf(stderr, "type: %d, ID: %lu\n", vector[j], (unsigned long)j);
}
}
@@ -5957,7 +5957,7 @@ void print_core_snp(haplotype_evdience_alloc* hap)
{
if(vector[j] == 2)
{
fprintf(stderr, "type: %d, ID: %lu\n", vector[j], j);
fprintf(stderr, "type: %d, ID: %lu\n", vector[j], (unsigned long)j);
}
}
@@ -7525,4 +7525,4 @@ long long* max_t_pos, long long* max_q_pos, long long* score, long long* droped)
putchar('\n');
**/
/**************for ksw2**************/
}
}