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save bfore multiple overlaps

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chhylp123
2020-08-23 08:46:33 -04:00
parent 90d3cb69b9
commit 03cf0d475c
15 changed files with 1120 additions and 131 deletions
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Hash_Table.cpp
+21
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@@ -391,6 +391,16 @@ void chain_DP(k_mer_hit* a, long long a_n, Chain_Data* dp, overlap_region* resul
resize_Chain_Data(dp, a_n);
ret = ha_chain_check(a, a_n, dp, min_score, band_width_threshold);
/***************************************debug**************************************/
if(a_n > 0 && Get_NAME_LENGTH((R_INF),a[0].readID)==strlen("m64062_190803_042216/128778853/ccs"))
{
if (memcmp("m64062_190803_042216/128778853/ccs", Get_NAME((R_INF), a[0].readID),
Get_NAME_LENGTH((R_INF), a[0].readID)) == 0)
{
fprintf(stderr, "ret: %d\n", ret);
}
}
/***************************************debug**************************************/
if (ret > 0) {
a_n = ret;
goto skip_dp;
@@ -500,6 +510,17 @@ skip_dp:
}
/***************************************debug**************************************/
if(a_n > 0 && Get_NAME_LENGTH((R_INF),a[0].readID)==strlen("m64062_190803_042216/128778853/ccs"))
{
if (memcmp("m64062_190803_042216/128778853/ccs", Get_NAME((R_INF), a[0].readID),
Get_NAME_LENGTH((R_INF), a[0].readID)) == 0)
{
fprintf(stderr, "max_i: %lld\n", max_i);
}
}
/***************************************debug**************************************/
clear_fake_cigar(&(result->f_cigar));
///note a has been sorted by offset, that means has been sorted by query offset
i = max_i;