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save bfore multiple overlaps

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This commit is contained in:
chhylp123
2020-08-23 08:46:33 -04:00
parent 90d3cb69b9
commit 03cf0d475c
15 changed files with 1120 additions and 131 deletions
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Process_Read.h
+13 -1
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@@ -93,6 +93,7 @@ typedef struct
uint32_t new_length;
} Compressed_Cigar_record;
#define AMBIGU 0
#define FATHER 1
#define MOTHER 2
@@ -128,6 +129,8 @@ typedef struct
ma_hit_t_alloc* paf;
ma_hit_t_alloc* reverse_paf;
///kvec_t_u64_warp* pb_regions;
} All_reads;
extern All_reads R_INF;
@@ -140,6 +143,14 @@ typedef struct
long long RID;
} UC_Read;
typedef struct
{
char** read_name;
uint64_t query_num;
FILE* fp;
pthread_mutex_t OutputMutex;
} Debug_reads;
void init_All_reads(All_reads* r);
void malloc_All_reads(All_reads* r);
void ha_insert_read_len(All_reads *r, int read_len, int name_len);
@@ -154,5 +165,6 @@ void write_All_reads(All_reads* r, char* read_file_name);
int load_All_reads(All_reads* r, char* read_file_name);
void destory_All_reads(All_reads* r);
int destory_read_bin(All_reads* r);
void init_Debug_reads(Debug_reads* x, const char* file);
void destory_Debug_reads(Debug_reads* x);
#endif