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print misjoin debug

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chhylp123
2021-06-23 09:49:44 -04:00
parent 5a400af39d
commit 0410662841
3 changed files with 46 additions and 5 deletions
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hic.cpp
+5 -2
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@@ -16107,8 +16107,11 @@ int hic_short_align(const enzyme *fn1, const enzyme *fn2, ha_ug_index* idx, ug_o
sl.hits.uID_bits = idx->uID_bits; sl.hits.pos_mode = idx->pos_mode;
update_switch_unitig(idx->ug, idx->read_g, &(sl.hits), &(idx->t_ch->k_trans), 10, 20, asm_opt.misjoin_len, 0.15);
renew_idx_para(idx, idx->ug);
if(asm_opt.misjoin_len > 0)
{
update_switch_unitig(idx->ug, idx->read_g, &(sl.hits), &(idx->t_ch->k_trans), 10, 20, asm_opt.misjoin_len, 0.15);
renew_idx_para(idx, idx->ug);
}
// print_hits_simp(idx, &sl.hits);
// print_kv_u_trans_t(&(idx->t_ch->k_trans));