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r493 ->HiC/UL/Trans

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chhylp123
2023-01-11 20:38:45 -05:00
parent a674110b23
commit 0613b18af9
19 changed files with 3230 additions and 461 deletions
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7
CommandLines.cpp
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@@ -215,7 +215,8 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->purge_level_trio = 0;
asm_opt->purge_simi_rate_l2 = 0.75;
asm_opt->purge_simi_rate_l3 = 0.55;
asm_opt->trans_base_rate = 0.8;
asm_opt->trans_base_rate = 0.93;
asm_opt->trans_base_rate_sec = 0.5;
asm_opt->purge_overlap_len = 1;
///asm_opt->purge_overlap_len_hic = 50;
asm_opt->recover_atg_cov_min = -1024;
@@ -252,6 +253,10 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->ul_ec_round = 3;
asm_opt->is_dbg_het_cnt = 0;
asm_opt->is_low_het_ul = 0;
asm_opt->is_base_trans = 1;
asm_opt->is_read_trans = 1;
asm_opt->is_topo_trans = 1;
asm_opt->is_bub_trans = 1;
}
void destory_enzyme(enzyme* f)