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r493 ->HiC/UL/Trans

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chhylp123
2023-01-11 20:38:45 -05:00
parent a674110b23
commit 0613b18af9
19 changed files with 3230 additions and 461 deletions
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3
Overlaps.h
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@@ -33,6 +33,7 @@
// #define ALTER_LABLE 2
// #define HAP_LABLE 4
#define HA_RE_UL_ID "re"
#define ug_ext_len 75000
#define Get_qn(RECORD) ((uint32_t)((RECORD).qns>>32))
#define Get_qs(RECORD) ((uint32_t)((RECORD).qns))
@@ -1135,6 +1136,8 @@ asg_t *i_read_sg, trans_chain* i_t_ch, uint32_t i_cBeg, uint32_t i_cEnd);
void extract_sub_overlaps(uint32_t i_tScur, uint32_t i_tEcur, uint32_t i_tSpre, uint32_t i_tEpre,
uint32_t tn, kv_u_trans_hit_t* ktb, uint32_t bn);
void clean_u_trans_t_idx(kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g);
void clean_u_trans_t_idx_adv(kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g);
void clean_u_trans_t_idx_filter_adv(kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g);
uint32_t test_dbug(ma_ug_t* ug, FILE* fp);
void write_dbug(ma_ug_t* ug, FILE* fp);
int asg_arc_identify_simple_bubbles_multi(asg_t *g, bub_label_t* x, int check_cross);