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r493 ->HiC/UL/Trans

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chhylp123
2023-01-11 20:38:45 -05:00
parent a674110b23
commit 0613b18af9
19 changed files with 3230 additions and 461 deletions
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gfa_ut.h
+2
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@@ -3,6 +3,7 @@
#include "Overlaps.h"
#include "hic.h"
typedef struct {
asg_t *g;
ma_hit_t_alloc *src;
@@ -35,5 +36,6 @@ void post_rescue(ug_opt_t *uopt, asg_t *sg, ma_hit_t_alloc *src, ma_hit_t_alloc
// void print_raw_u2rgfa_seq(all_ul_t *aln, R_to_U* rI, uint32_t is_detail);
bubble_type *gen_bubble_chain(asg_t *sg, ma_ug_t *ug, ug_opt_t *uopt, uint8_t **ir_het);
void filter_sg_by_ug(asg_t *rg, ma_ug_t *ug, ug_opt_t *uopt);
void ug_ext_gfa(ug_opt_t *uopt, asg_t *sg, uint32_t max_len);
#endif