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r493 ->HiC/UL/Trans

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chhylp123
2023-01-11 20:38:45 -05:00
parent a674110b23
commit 0613b18af9
19 changed files with 3230 additions and 461 deletions
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inter.h
+2
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@@ -2,6 +2,7 @@
#define __INTER__
#include "Overlaps.h"
#include "Process_Read.h"
#include "hic.h"
#define G_CHAIN_BW 16//128
#define FLANK_M (0x7fffU)
@@ -116,5 +117,6 @@ void gen_ul_vec_rid_t(all_ul_t *x, All_reads *rdb, ma_ug_t *ug);
void update_ug_arch_ul_mul(ma_ug_t *ug);
void print_ul_alignment(ma_ug_t *ug, all_ul_t *aln, uint32_t id, const char* cmd);
void clear_all_ul_t(all_ul_t *x);
void trans_base_infer(ma_ug_t *ug, asg_t *sg, ug_opt_t *uopt, kv_u_trans_t *res, bubble_type *bub);
#endif