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r942 for temp release

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chhylp123
2026-05-30 23:20:10 -04:00
parent bca2394b69
commit 06cf12a32a
8 changed files with 1210 additions and 59 deletions
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Overlaps.cpp
+8 -5
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@@ -39951,12 +39951,14 @@ long long bubble_dist, int read_graph, R_to_U* ruIndex, asg_t **sg_ptr,
ma_sub_t **coverage_cut_ptr, uint8_t *cmk, int debug_g)
{
// const char *dbg_ids[] = {
// "6152e53b-a2ec-4f23-898f-462c9dee8e0f",
// "c5bbf86e-3146-4757-9882-55a5baebf770",
// "19af141e-d049-4229-a8b4-58aab021cca1",
// "fb9370c5-2932-468c-a431-c141ca2d3787",
// "e36a655f-984d-4f1d-8092-4404a7f99313",
// };
// const uint64_t dbg_ids_n[] = {
// 3177240,
// 2198541,
// 3163025,
// 3727972,
// 3567631
// };
// hc_dbg_prt_ma_hit_t(dbg_ids, sizeof(dbg_ids)/sizeof(dbg_ids[0]), dbg_ids_n, sizeof(dbg_ids_n)/sizeof(dbg_ids_n[0]), "test_0", sources, NULL, NULL, NULL);
@@ -40069,12 +40071,13 @@ ma_sub_t **coverage_cut_ptr, uint8_t *cmk, int debug_g)
debug_gfa:;
}
**/
// hc_dbg_prt_ma_hit_t(NULL, 0, NULL, 0, "clen_z", sources, ruIndex, coverage_cut, sg);
// hc_dbg_prt_ma_hit_t(dbg_ids, sizeof(dbg_ids)/sizeof(dbg_ids[0]), dbg_ids_n, sizeof(dbg_ids_n)/sizeof(dbg_ids_n[0]), "clen_z", sources, ruIndex, coverage_cut, sg);
gen_ug_opt_t(&uopt, sources, reverse_sources, max_hang_length, mini_overlap_length, gap_fuzz, min_dp, readLen, coverage_cut, ruIndex,
(asm_opt.max_short_tip*2), 0.15, 3, 0.05, 0.9, &b_mask_t, te);
ul_clean_gfa(&uopt, sg, sources, reverse_sources, ruIndex, clean_round, min_ovlp_drop_ratio, max_ovlp_drop_ratio,
0.6, asm_opt.max_short_tip, gap_fuzz, &b_mask_t, !!asm_opt.ar, ha_opt_triobin(&asm_opt), UL_COV_THRES, cmk, o_file);
// exit(1);
/**
///@brief debug
if (asm_opt.flag & HA_F_VERBOSE_GFA) {