fix bugs for overlaps of different length

2026-10-10 06:50:55 +08:00 · 2019-12-09 17:07:11 -05:00
parent fca9c8db15
commit 09603432e5
11 changed files with 1726 additions and 94 deletions
@@ -1230,7 +1230,7 @@ void correct_overlap(overlap_region_alloc* overlap_list, All_reads* R_INF,
                        long long* potiental_matched_overlap_0, long long* potiental_matched_overlap_1,
                        Cigar_record* current_cigar, haplotype_evdience_alloc* hap,
                        Round2_alignment* second_round, int force_repeat, int is_consensus,
-                        int* fully_cov, int* abnormal);
+                        int* fully_cov, int* abnormal, uint8_t* c2n);
 void init_Correct_dumy(Correct_dumy* list);
 void destory_Correct_dumy(Correct_dumy* list);
 void clear_Correct_dumy(Correct_dumy* list, overlap_region_alloc* overlap_list);