xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-09 12:28:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

fix bugs for overlaps of different length

Browse Source
This commit is contained in:
Haoyu Cheng
2019-12-09 17:07:11 -05:00
parent fca9c8db15
commit 09603432e5
11 changed files with 1726 additions and 94 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Makefile
+3 -2
View File
@@ -3,7 +3,7 @@ CXXFLAGS= -g -O3 -msse4.2 -mpopcnt -fomit-frame-pointer -Winline -Wall
CPPFLAGS=
INCLUDES=
OBJS= Output.o CommandLines.o Process_Read.o Assembly.o kmer.o Hash_Table.o \
POA.o Correct.o Levenshtein_distance.o edlib.o Overlaps.o
POA.o Correct.o Levenshtein_distance.o edlib.o Overlaps.o ksw2_extz2_sse.o
EXE= ccs_assembly
LIBS= -lz -lpthread -lm
@@ -37,7 +37,7 @@ Assembly.o: Levenshtein_distance.h Output.h
CommandLines.o: CommandLines.h ketopt.h
Correct.o: Correct.h Hash_Table.h khash.h kmer.h Process_Read.h kseq.h
Correct.o: Overlaps.h kvec.h kdq.h CommandLines.h Levenshtein_distance.h
Correct.o: POA.h edlib.h Assembly.h
Correct.o: POA.h edlib.h Assembly.h ksw2.h
Hash_Table.o: Hash_Table.h khash.h kmer.h Process_Read.h kseq.h Overlaps.h
Hash_Table.o: kvec.h kdq.h CommandLines.h Correct.h Levenshtein_distance.h
Hash_Table.o: POA.h ksort.h
@@ -52,3 +52,4 @@ edlib.o: edlib.h
kmer.o: kmer.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h CommandLines.h
main.o: CommandLines.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h
main.o: Assembly.h Levenshtein_distance.h edlib.h
ksw2_extz2_sse.o: ksw2.h