Input reads

main.cpp

@@ -0,0 +1,28 @@
+#include <stdio.h>
+#include <stdlib.h>
+#include "CommandLines.h"
+#include "Process_Read.h"
+#include "Assembly.h"
+
+
+int main(int argc, char *argv[])
+{
+
+    if (!CommandLine_process(argc, argv))
+        return 1;
+
+
+    if (!initiReadAllReads(read_file_name))
+    {
+        fprintf(stdout, "Cannot open read files. \n");
+        return 1;
+    }
+
+
+    Counting();
+
+    
+
+
+    return 1;
+}