xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-15 12:47:57 +08:00
Code Issues Packages Projects Releases Wiki Activity

integration/print het sites

Browse Source
This commit is contained in:
chhylp123
2022-01-17 18:29:48 -05:00
parent 7af0d85258
commit 0ce5a7ba5b
18 changed files with 2884 additions and 385 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
htab.cpp
View File

@@ -674,7 +674,7 @@ static void sf##_worker_for_mz(void *data, long i, int tid)\
VType *b = &s->mz_buf[tid];\
s->mz_buf[tid].n = 0;\
sf##_ha_sketch(s->seq[i], s->len[i], s->p->opt->w, s->p->opt->k, s->n_seq0 + i, s->p->opt->is_HPC, b, s->p->flt_tab, asm_opt.mz_sample_dist, 0, 0, \
(s->p->pt&&(s->p->flag&HAF_COUNT_REFINE))?s->p->pt:NULL, s->p->opt->min_rcnt, asm_opt.dp_min_len, asm_opt.dp_e, &(s->mt[tid]), asm_opt.mz_rewin, s->uq);\
(s->p->pt&&(s->p->flag&HAF_COUNT_REFINE))?s->p->pt:NULL, s->p->opt->min_rcnt, asm_opt.dp_min_len, asm_opt.dp_e, &(s->mt[tid]), asm_opt.mz_rewin, s->uq, NULL);\
s->mz[i].n = s->mz[i].m = b->n;\
MALLOC(s->mz[i].a, b->n);\
MEMCPY(s->mz[i].a, b->a, b->n);\
@@ -733,7 +733,7 @@ static void *sf##_worker_count(void *data, int step, void *in) /** callback for
}\
MALLOC(s->seq[s->n_seq], u->len);\
if(u->s) memcpy(s->seq[s->n_seq], u->s, u->len);\
else retrieve_u_seq(NULL, s->seq[s->n_seq], u, 0, 0, -1);\
else retrieve_u_seq(NULL, s->seq[s->n_seq], u, 0, 0, -1, NULL);\
s->len[s->n_seq++] = u->len;\
++p->n_seq;\
s->sum_len += u->len;\