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write to hifiasm read store

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Heng Li
2020-03-26 14:23:17 -04:00
parent c3bbaa8a39
commit 0dd927bdce
8 changed files with 91 additions and 67 deletions
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htab.h
+6 -2
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@@ -2,6 +2,8 @@
#define __HA_HTAB_H__
#define __STDC_LIMIT_MACROS
#include <stdint.h>
#include "Process_Read.h"
#include "CommandLines.h"
typedef struct {
uint64_t x;
@@ -16,12 +18,14 @@ typedef struct { uint32_t n, m; ha_mz1_t *a; } ha_mz1_v;
extern const unsigned char seq_nt4_table[256];
void *ha_gen_flt_tab(const hifiasm_opt_t *asm_opt, All_reads *rs);
void *ha_gen_mzidx(const hifiasm_opt_t *asm_opt, const void *flt_tab, All_reads *rs);
void trio_partition(void);
int ha_ft_isflt(const void *hh, uint64_t y);
void ha_ft_destroy(void *h);
void ha_idx_destroy(void *h);
void trio_partition(void);
double yak_cputime(void);
void yak_reset_realtime(void);
double yak_realtime(void);