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r198: made VERBOSE_GFA a CL option --dbg-gfa

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This commit is contained in:
Heng Li
2020-04-05 13:01:03 -04:00
parent 31356f9e02
commit 0f1994fc1f
5 changed files with 19 additions and 7 deletions
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CommandLines.cpp
+10 -2
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@@ -9,6 +9,12 @@
hifiasm_opt_t asm_opt;
static ko_longopt_t long_options[] = {
{ "version", ko_no_argument, 300 },
{ "dbg-gfa", ko_no_argument, 301 },
{ 0, 0, 0 }
};
double Get_T(void)
{
struct timeval t;
@@ -90,6 +96,7 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->max_short_tip = 3;
asm_opt->min_cnt = 2;
asm_opt->mid_cnt = 5;
asm_opt->verbose_gfa = 0;
}
void destory_opt(hifiasm_opt_t* asm_opt)
@@ -301,13 +308,13 @@ int CommandLine_process(int argc, char *argv[], hifiasm_opt_t* asm_opt)
int c;
while ((c = ketopt(&opt, argc, argv, 1, "hvt:o:k:lw:m:n:r:a:b:z:x:y:p:c:d:M:P:if:D:FN:", 0)) >= 0) {
while ((c = ketopt(&opt, argc, argv, 1, "hvt:o:k:lw:m:n:r:a:b:z:x:y:p:c:d:M:P:if:D:FN:", long_options)) >= 0) {
if (c == 'h')
{
Print_H(asm_opt);
return 0;
}
else if (c == 'v')
else if (c == 'v' || c == 300)
{
puts(HA_VERSION);
return 0;
@@ -335,6 +342,7 @@ int CommandLine_process(int argc, char *argv[], hifiasm_opt_t* asm_opt)
else if (c == 'p') asm_opt->small_pop_bubble_size = atoll(opt.arg);
else if (c == 'm') asm_opt->large_pop_bubble_size = atoll(opt.arg);
else if (c == 'n') asm_opt->max_short_tip = atoll(opt.arg);
else if (c == 301) asm_opt->verbose_gfa = 1;
else if (c == ':')
{
fprintf(stderr, "[ERROR] missing option argument in \"%s\"\n", argv[opt.i - 1]);