From 10ea89197b6dd7fd8dd442fb899f006c58649565 Mon Sep 17 00:00:00 2001 From: Haoyu Cheng Date: Thu, 26 Dec 2019 16:11:29 -0500 Subject: [PATCH] README --- README.md | 11 ++++------- 1 file changed, 4 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index f872a9d..4852343 100644 --- a/README.md +++ b/README.md @@ -18,12 +18,9 @@ Hifiasm is a standalone and lightweight assembler, which does not need external |[Human NA12878]|3Gb|x28|-k 40 -t 42 -r 2|200h| 5h32m|?114G|93.5Kb/18.6Mb| |[Human HG002]|3Gb|x43|-k 40 -t 42 -r 2|?405h|?10h12m|?122G|320kb/29Mb| |[Human CHM13]|3Gb|x27|-k 40 -t 42 -r 2|?|?|?|NA[2]/39.8Mb| -|[Butterfly]|358Mb|x35|-k 40 -t 42 -r 2 -z 20|17.1h|36m|16G|NA[3]/7.5Mb| +|[Butterfly]|358Mb|x35|-k 40 -t 42 -r 2 -z 20|17.1h|36m|16G|7.5Mb/NA[3]| + [1] unitig N50 is the N50 of assembly graph with haplotype information (i.e., bubbles), while the contig N50 is the N50 of haplotype collapsed assembly (i.e., without bubbles). - - +[2] CHM13 is a homozygous sample, so unitig N50 makes no sense. +[3] Butterfly has high heterozygous rate, so most chromosomes have been fully separated into two haplotypes. In this case, contig N50 makes no sense.