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implemented ha_pt_get()

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Heng Li
2020-03-26 23:00:00 -04:00
parent 4aa4ebaf96
commit 10ed8b36ec
5 changed files with 44 additions and 33 deletions
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12
Assembly.cpp
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@@ -12,7 +12,7 @@
#include "htab.h"
void *ha_flt_tab;
void *ha_idx;
ha_pt_t *ha_idx;
All_reads R_INF;
pthread_mutex_t statistics;
@@ -817,7 +817,7 @@ void Overlap_calculate_multipe_thr()
}
ha_idx_destroy(ha_idx);
ha_pt_destroy(ha_idx);
ha_idx = 0;
fprintf(stderr, "All overlaps have been calculated.\n");
@@ -1391,7 +1391,7 @@ void generate_overlaps(int last_round)
asm_opt.roundID = asm_opt.number_of_round - last_round;
fprintf(stderr, "Begin calculting final overlaps ...\n");
ha_idx = ha_gen_mzidx(&asm_opt, ha_flt_tab, asm_opt.roundID == 0? 0 : 1, &R_INF);
ha_idx = ha_pt_gen(&asm_opt, ha_flt_tab, asm_opt.roundID == 0? 0 : 1, &R_INF);
pthread_t *_r_threads;
@@ -1412,7 +1412,7 @@ void generate_overlaps(int last_round)
free(_r_threads);
///rescue_edges(R_INF.paf, R_INF.reverse_paf, R_INF.total_reads, 4, 0.985);
ha_idx_destroy(ha_idx);
ha_pt_destroy(ha_idx);
ha_idx = 0;
fprintf(stderr, "Final overlaps have been calculated.\n");
@@ -1453,9 +1453,9 @@ void Correct_Reads(int last_round)
fprintf(stderr, "Error correction: Start the %d-th round ...\n", asm_opt.roundID);
ha_idx = ha_gen_mzidx(&asm_opt, ha_flt_tab, asm_opt.roundID == 0? 0 : 1, &R_INF);
ha_idx = ha_pt_gen(&asm_opt, ha_flt_tab, asm_opt.roundID == 0? 0 : 1, &R_INF);
Overlap_calculate_multipe_thr();
ha_idx_destroy(ha_idx);
ha_pt_destroy(ha_idx);
fprintf(stderr, "Error correction: The %d-th round has been completed.\n", asm_opt.roundID);