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implemented ha_pt_get()

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Heng Li
2020-03-26 23:00:00 -04:00
parent 4aa4ebaf96
commit 10ed8b36ec
5 changed files with 44 additions and 33 deletions
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htab.h
+11 -6
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@@ -12,23 +12,28 @@ typedef struct {
typedef struct { uint32_t n, m; ha_mz1_t *a; } ha_mz1_v;
struct ha_pt_s;
typedef struct ha_pt_s ha_pt_t;
extern const unsigned char seq_nt4_table[256];
void *ha_gen_flt_tab(const hifiasm_opt_t *asm_opt, All_reads *rs);
void *ha_gen_mzidx(const hifiasm_opt_t *asm_opt, const void *flt_tab, int read_from_store, All_reads *rs);
void trio_partition(void);
void *ha_ft_gen(const hifiasm_opt_t *asm_opt, All_reads *rs);
int ha_ft_isflt(const void *hh, uint64_t y);
void ha_ft_destroy(void *h);
void ha_idx_destroy(void *h);
ha_pt_t *ha_pt_gen(const hifiasm_opt_t *asm_opt, const void *flt_tab, int read_from_store, All_reads *rs);
void ha_pt_destroy(ha_pt_t *h);
const uint64_t *ha_pt_get(const ha_pt_t *h, uint64_t hash, int *n);
double yak_cputime(void);
void yak_reset_realtime(void);
double yak_realtime(void);
long yak_peakrss(void);
void trio_partition(void);
void ha_sketch(const char *str, int len, int w, int k, uint32_t rid, int is_hpc, ha_mz1_v *p, const void *hf);
int yak_analyze_count(int n_cnt, const int64_t *cnt, int *peak_het);
int ha_analyze_count(int n_cnt, const int64_t *cnt, int *peak_het);
static inline uint64_t yak_hash64(uint64_t key, uint64_t mask) // invertible integer hash function
{