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r329

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chhylp123
2021-04-25 14:50:36 -04:00
parent 1456686665
commit 11430d6a3b
3 changed files with 242 additions and 6 deletions
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3
CommandLines.cpp
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@@ -196,6 +196,7 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->n_perturb = 10000;
asm_opt->f_perturb = 0.1;
asm_opt->n_weight = 3;
asm_opt->is_alt = 0;
}
void destory_enzyme(enzyme* f)
@@ -651,7 +652,7 @@ int CommandLine_process(int argc, char *argv[], hifiasm_opt_t* asm_opt)
else if (c == 317) asm_opt->b_low_cov = atoi(opt.arg);
else if (c == 318) asm_opt->b_high_cov = atoi(opt.arg);
else if (c == 319) asm_opt->m_rate = atof(opt.arg);
else if (c == 320) asm_opt->flag -= HA_F_PARTITION;
else if (c == 320) asm_opt->flag -= HA_F_PARTITION, asm_opt->is_alt = 1;
else if (c == 321) asm_opt->trio_flag_occ_thres = atoi(opt.arg);
else if (c == 322) asm_opt->seed = atol(opt.arg);
else if (c == 323) asm_opt->n_perturb = atoi(opt.arg);