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r502->additional alignment

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chhylp123
2023-01-25 09:39:41 -05:00
parent 78ef43ce8e
commit 1166b92eb4
8 changed files with 228 additions and 70 deletions
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inter.h
+1 -1
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@@ -108,7 +108,7 @@ void ul_resolve(ma_ug_t *ug, const asg_t *rg, const ug_opt_t *uopt, int hap_n);
void ul_load(const ug_opt_t *uopt);
uint64_t* get_hifi2ul_list(all_ul_t *x, uint64_t hid, uint64_t* a_n);
uint64_t ul_refine_alignment(const ug_opt_t *uopt, asg_t *sg);
ma_ug_t *ul_realignment(const ug_opt_t *uopt, asg_t *sg, uint32_t double_check_cache);
ma_ug_t *ul_realignment(const ug_opt_t *uopt, asg_t *sg, uint32_t double_check_cache, const char *bin_file);
int32_t write_all_ul_t(all_ul_t *x, char* file_name, ma_ug_t *ug);
int32_t load_all_ul_t(all_ul_t *x, char* file_name, All_reads *hR, ma_ug_t *ug);
uint32_t ugl_cover_check(uint64_t is, uint64_t ie, ma_utg_t *u);