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This commit is contained in:
Haoyu Cheng
2019-12-28 04:45:53 -05:00
parent 8f549c1c16
commit 1523d10291
11 changed files with 831 additions and 107 deletions
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Overlaps.h
+26
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@@ -235,6 +235,32 @@ static inline void asg_seq_del(asg_t *g, uint32_t s)
}
}
static inline void asg_seq_drop(asg_t *g, uint32_t s)
{
///s is not at primary
if(g->seq[s].c)
{
uint32_t k;
for (k = 0; k < 2; ++k)
{
///two directions of this node
uint32_t i, v = s<<1 | k;
uint32_t nv = asg_arc_n(g, v);
asg_arc_t *av = asg_arc_a(g, v);
for (i = 0; i < nv; ++i)
{
if(av[i].del) continue;
///if output node is at primary
if(g->seq[(av[i].v>>1)].c == 0)
{
av[i].del = 1;
asg_arc_del(g, av[i].v^1, v^1, 1);
}
}
}
}
}
typedef struct {
uint32_t len:31, circ:1; // len: length of the unitig; circ: circular if non-zero