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This commit is contained in:
Haoyu Cheng
2019-12-28 04:45:53 -05:00
parent 8f549c1c16
commit 1523d10291
11 changed files with 831 additions and 107 deletions
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14
Process_Read.h
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@@ -41,8 +41,6 @@ extern char rc_Table[5];
#define RC_CHAR(x) rc_Table[seq_nt6_table[(uint8_t)x]]
void init_aux_table();
void init_kseq(char* file);
void destory_kseq();
int get_read(kseq_t *s, int adapterLen);
@@ -172,6 +170,15 @@ typedef struct
long long RID;
} UC_Read;
typedef struct
{
gzFile fp;
kseq_t *seq;
char** reads;
int num_reads;
int idx;
} gz_files;
void init_R_buffer(int thread_num);
void init_All_reads(All_reads* r);
void* input_reads_muti_threads(void*);
@@ -192,5 +199,8 @@ void destory_R_buffer_block(R_buffer_block* curr_sub_block);
void destory_R_buffer();
void clear_R_buffer();
void init_gz_files(hifiasm_opt_t* asm_opt);
void destory_gz_files();
#endif