From 16ae545ee1bcb244f0131ae6fc06ed1704379db8 Mon Sep 17 00:00:00 2001 From: Haoyu Cheng Date: Thu, 26 Dec 2019 14:56:21 -0500 Subject: [PATCH] README --- README.md | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 920ccd2..9620b75 100644 --- a/README.md +++ b/README.md @@ -9,7 +9,6 @@ cd hifiasm && make ``` ## Introduction -Hifiasm is an ultrafast haplotype-resolved de novo assembler based on PacBio Hifi reads. Unlike most existing assemblers, hifiasm starts from uncollapsed genome. Thus, it is able to keep the haplotype information as much as possible. The input of hifiasm is the PacBio Hifi reads in fasta/fastq format, and there are two types of output: (1) haplotype-resolved assembly graph in GFA format; (2) haplotype-aware error corrected reads. So far Hifiasm is in early development stage, it will output phased chromosome-level high-quality assembly in the near future. +Hifiasm is an ultrafast haplotype-resolved de novo assembler based on PacBio Hifi reads. Unlike most existing assemblers, hifiasm starts from uncollapsed genome. Thus, it is able to keep the haplotype information as much as possible. The input of hifiasm is the PacBio Hifi reads in fasta/fastq format, and there are two types of output: (1) haplotype-resolved assembly graph in GFA format; (2) haplotype-aware error corrected reads. So far hifiasm is in early development stage, it will output phased chromosome-level high-quality assembly in the near future. -Hifiasm is a standalone and lightweight assembler, which does not need external libraries (except zlib). It is a high-performance assembler for large genomes, and can generate high-quality assembly. - \ No newline at end of file +Hifiasm is a standalone and lightweight assembler, which does not need external libraries (except zlib). For large genomes, it can generate high-quality assembly in a few hours. Hifiasm has been tested on the following datasets: