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tmp macro

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chhylp123
2021-08-30 09:30:48 -04:00
parent e230b3a55f
commit 17b5cb21d3
9 changed files with 157 additions and 252 deletions
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htab.h
+8 -8
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@@ -25,16 +25,16 @@ typedef struct { uint32_t n, m; ha_mz1_t *a; } ha_mz1_v;
typedef struct {
uint64_t x; ///x is the hash key
///rid is the read id, pos is the end pos of this minimizer, rev is the direction
///span is the length of this k-mer. For non-HPC k-mer, span may not be equal to k
uint64_t rid:30, pos:34;
uint16_t rev:1, span:15;
uint64_t rid:31, rev:1;
uint32_t pos;
uint8_t span;
} ha_mzl_t;
typedef struct {
uint64_t rid:30, pos:34;
uint16_t rev:1, span:15;
} ha_mzl_idxpos_t;
uint64_t rid:31, rev:1;
uint32_t pos;
uint8_t span;
} ha_idxposl_t;
typedef struct { uint32_t n, m; ha_mzl_t *a; } ha_mzl_v;
@@ -101,7 +101,7 @@ double yak_cpu_usage(void);
void ha_triobin(const hifiasm_opt_t *opt);
void ha_sketch(const char *str, int len, int w, int k, uint32_t rid, int is_hpc, ha_mz1_v *p, const void *hf, int sample_dist, kvec_t_u8_warp* k_flag, kvec_t_u64_warp* dbg_ct, ha_pt_t *pt, int min_freq, int32_t dp_min_len, float dp_e, st_mt_t *mt, int32_t ws);
void ha_sketch(const char *str, int len, int w, int k, uint32_t rid, int is_hpc, ha_mz1_v *p, const void *hf, int sample_dist, kvec_t_u8_warp* k_flag, kvec_t_u64_warp* dbg_ct, ha_pt_t *pt, int min_freq, int32_t dp_min_len, float dp_e, st_mt_t *mt, int32_t ws, int32_t is_unique);
int ha_analyze_count(int n_cnt, int start_cnt, int m_peak_hom, const int64_t *cnt, int *peak_het);
int adj_m_peak_hom(int m_peak_hom, int max_i, int max2_i, int max3_i, int *peak_het);
void print_hist_lines(int n_cnt, int start_cnt, const int64_t *cnt);