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fix the memory issue

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chhylp123
2024-12-06 05:17:30 -05:00
parent 676385cf8e
commit 184eb0a9fe
6 changed files with 24 additions and 16 deletions
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ecovlp.cpp
+9 -2
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@@ -3220,7 +3220,7 @@ static void worker_hap_ec(void *data, long i, int tid)
// if(i != 1124) return;
// if(i != 700) return;
// if(i != 2243244) return;
// if(i != 19350) return;
// if(i != 15139) return;
// debug_retrive_bqual(D, &b->v8t, i, 256); return;
@@ -3233,6 +3233,8 @@ static void worker_hap_ec(void *data, long i, int tid)
aux_o = fetch_aux_ovlp(&b->olist);///must be here
// stderr_phase_ovlp(&b->olist);
///debug for memory
// snprintf(NULL, 0, "dwn::%u\tdcn::%u", (uint32_t)aux_o->w_list.n, (uint32_t)aux_o->w_list.c.n);
@@ -4849,7 +4851,12 @@ void h_ec_lchain_fast_new(ha_abuf_t *ab, uint32_t rid, UC_Read *qu, UC_Read *tu,
oa = in0->buffer; on = in0->length;
for (k = 0; k < on; k++) {
if(oa[k].el) {
z = &(ol->list[ol->length++]);
// z = &(ol->list[ol->length++]);
kv_pushp_ol(overlap_region, (*ol), &z);
clear_fake_cigar(&(z->f_cigar));
clear_window_list_alloc(&(z->w_list));
clear_window_list_alloc(&(z->boundary_cigars));
z->x_id = rid; z->y_id = oa[k].tn;
z->x_pos_strand = 0; z->y_pos_strand = oa[k].rev;
z->x_pos_s = (uint32_t)oa[k].qns;