From 18b69f1a725d366cd4292714cbf3bf7c75d96f97 Mon Sep 17 00:00:00 2001
From: Heng Li <lh3@me.com>
Date: Fri, 3 Apr 2020 22:19:55 -0400
Subject: [PATCH] r187: reversed round in clear_opt()

---
 Assembly.cpp     | 4 ++--
 CommandLines.cpp | 4 ++--
 CommandLines.h   | 4 ++--
 3 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/Assembly.cpp b/Assembly.cpp
index 7e3895d..601d7f3 100644
--- a/Assembly.cpp
+++ b/Assembly.cpp
@@ -1315,14 +1315,14 @@ int ha_assemble(void)
 		// error correction
 		assert(asm_opt.number_of_round > 0);
 		for (r = 0; r < asm_opt.number_of_round; ++r) {
-			clear_opt(&asm_opt, asm_opt.number_of_round - r); // this update asm_opt.roundID and a few other fields
+			clear_opt(&asm_opt, r); // this update asm_opt.roundID and a few other fields
 			ha_overlap_and_correct(r);
 			fprintf(stderr, "[M::%s::%.3f*%.2f] ==> corrected reads for round %d\n", __func__, yak_realtime(), yak_cputime() / yak_realtime(), r + 1);
 		}
 		Output_corrected_reads();
 		fprintf(stderr, "[M::%s::%.3f*%.2f] ==> written corrected reads to disk\n", __func__, yak_realtime(), yak_cputime() / yak_realtime());
 		// overlap between corrected reads
-		clear_opt(&asm_opt, 0);
+		clear_opt(&asm_opt, asm_opt.number_of_round);
 		ha_overlap_final();
 		fprintf(stderr, "[M::%s::%.3f*%.2f] ==> found overlaps for the final round\n", __func__, yak_realtime(), yak_cputime() / yak_realtime());
 		ha_ft_destroy(ha_flt_tab);
diff --git a/CommandLines.cpp b/CommandLines.cpp
index fab4cd3..684873b 100644
--- a/CommandLines.cpp
+++ b/CommandLines.cpp
@@ -101,13 +101,13 @@ void destory_opt(hifiasm_opt_t* asm_opt)
     }
 }
 
-void clear_opt(hifiasm_opt_t* asm_opt, int last_round)
+void clear_opt(hifiasm_opt_t* asm_opt, int round)
 {
     asm_opt->complete_threads = 0;
     asm_opt->num_bases = 0;
     asm_opt->num_corrected_bases = 0;
     asm_opt->num_recorrected_bases = 0;
-    asm_opt->roundID = asm_opt->number_of_round - last_round;
+    asm_opt->roundID = round;
 }
 
 int check_file(char* name, const char* opt)
diff --git a/CommandLines.h b/CommandLines.h
index cbce419..38056e6 100644
--- a/CommandLines.h
+++ b/CommandLines.h
@@ -3,7 +3,7 @@
 
 #include <pthread.h>
 
-#define HA_VERSION "0.3.0-dirty-r186"
+#define HA_VERSION "0.3.0-dirty-r187"
 
 #define VERBOSE 0
 #define VERBOSE_GFA 0
@@ -56,7 +56,7 @@ extern hifiasm_opt_t asm_opt;
 
 void init_opt(hifiasm_opt_t* asm_opt);
 void destory_opt(hifiasm_opt_t* asm_opt);
-void clear_opt(hifiasm_opt_t* asm_opt, int last_round);
+void clear_opt(hifiasm_opt_t* asm_opt, int round);
 int CommandLine_process(int argc, char *argv[], hifiasm_opt_t* asm_opt);
 double Get_T(void);