xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-01 13:48:11 +08:00
Code Issues Packages Projects Releases Wiki Activity

backup trans_chain

Browse Source
This commit is contained in:
chhylp123
2021-04-04 20:27:19 -04:00
parent 8e75eb5a05
commit 1a6f386823
3 changed files with 2 additions and 85 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Overlaps.cpp
-13
View File
@@ -12115,32 +12115,24 @@ bub_label_t* b_mask_t)
ma_ug_t *copy_ug = copy_untig_graph(ug);
///asm_opt.purge_overlap_len = asm_opt.purge_overlap_len_hic;
///asm_opt.purge_simi_thres = asm_opt.purge_simi_rate_hic;
fprintf(stderr, "sb0sb\n");
adjust_utg_by_primary(&copy_ug, copy_sg, TRIO_THRES, sources, reverse_sources, coverage_cut,
tipsLen, tip_drop_ratio, stops_threshold, ruIndex, chimeric_rate, drop_ratio,
max_hang, min_ovlp, &new_rtg_edges, &cov, b_mask_t, 1);
fprintf(stderr, "sb1sb\n");
ma_ug_destroy(copy_ug);
asg_destroy(copy_sg);
fprintf(stderr, "sb2sb\n");
ma_ug_print_bed(ug, sg, &R_INF, coverage_cut, sources, &new_rtg_edges,
max_hang, min_ovlp, asm_opt.hic_inconsist_rate, NULL, NULL, cov);
fprintf(stderr, "sb3sb\n");
fprintf(stderr, "sb4sb\n");
new_rtg_edges.a.n = 0;
ma_ug_seq(ug, sg, &R_INF, coverage_cut, sources, &new_rtg_edges, max_hang, min_ovlp);
///classify_untigs(ug, sg, coverage_cut, sources, reverse_sources, ruIndex, &new_rtg_edges, max_hang, min_ovlp);
fprintf(stderr, "sb5sb\n");
hic_analysis(ug, sg, cov);
fprintf(stderr, "sb6sb\n");
destory_hap_cov_t(&cov);
ma_ug_destroy(ug);
kv_destroy(new_rtg_edges.a);
@@ -28895,11 +28887,6 @@ void flat_bubbles(asg_t *sg, uint8_t* r_het)
{
asg_bub_pop1_primary_trio(ug->g, NULL, v, tLen, &b, (uint32_t)-1, (uint32_t)-1, 1, NULL, NULL, NULL, 0);
n_pop++;
// if(ug->g->seq[2031].c == ALTER_LABLE)
// {
// fprintf(stderr, "######round: %u, s-utg%.6ul, e-utg%.6ul\n",
// round, (v>>1)+1, (b.S.a[0]>>1)+1);
// }
}
}
}