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update readme and help information

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This commit is contained in:
Haoyu Cheng
2020-01-02 08:58:50 +08:00
parent 36b42c2d83
commit 1e46798bfb
2 changed files with 4 additions and 6 deletions
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3
CommandLines.cpp
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@@ -28,7 +28,8 @@ void Print_H(hifiasm_opt_t* asm_opt)
fprintf(stderr, " -k INT k-mer length [%d] (must be < 64)\n", asm_opt->k_mer_length);
///fprintf(stderr, " -w write all overlaps to disk, can accelerate assembly next time [%d]\n", asm_opt->write_index_to_disk);
///fprintf(stderr, " -l load all overlaps from disk, can avoid overlap calculation [%d]\n", asm_opt->load_index_from_disk);
fprintf(stderr, " -i ignore saved overlaps in *.ovlp*.bin files\n");
///fprintf(stderr, " -i ignore saved overlaps in *.ovlp*.bin files\n");
fprintf(stderr, " -i ignore saved overlaps in *.ovlp* files\n");
fprintf(stderr, " -z INT length of adapters that should be removed [%d]\n", asm_opt->adapterLen);
fprintf(stderr, " -p INT size of popped bubbles [%lld]\n", asm_opt->pop_bubble_size);
fprintf(stderr, " -x FLOAT max overlap drop ratio [%.2g]\n", asm_opt->max_drop_rate);