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M50 improved

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Haoyu Cheng
2019-12-23 09:37:26 -05:00
parent 06556e4a9b
commit 1ead2d3081
8 changed files with 1751 additions and 176 deletions
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Overlaps.h
+7
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@@ -330,4 +330,11 @@ int write);
void debug_info_of_specfic_read(char* name, ma_hit_t_alloc* sources,
ma_hit_t_alloc* reverse_sources, int id, char* command);
void collect_abnormal_edges(ma_hit_t_alloc* paf, ma_hit_t_alloc* rev_paf, long long readNum);
void add_overlaps(ma_hit_t_alloc* source_paf, ma_hit_t_alloc* dest_paf, uint64_t* source_index, long long listLen);
void remove_overlaps(ma_hit_t_alloc* source_paf, uint64_t* source_index, long long listLen);
void add_overlaps_from_different_sources(ma_hit_t_alloc* source_paf_list, ma_hit_t_alloc* dest_paf,
uint64_t* source_index, long long listLen);
void print_revise_edges(ma_hit_t_alloc* source_paf, uint64_t* source_index, long long listLen);
#endif