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M50 improved

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This commit is contained in:
Haoyu Cheng
2019-12-23 09:37:26 -05:00
parent 06556e4a9b
commit 1ead2d3081
8 changed files with 1751 additions and 176 deletions
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21
Process_Read.cpp
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@@ -329,6 +329,27 @@ void destory_UC_Read(UC_Read* r)
free(r->seq);
}
void init_aux_table()
{
if (bit_t_seq_table[0][0] == 0)
{
uint64_t i = 0;
for (i = 0; i < 256; i++)
{
bit_t_seq_table[i][0] = s_H[((i >> 6)&(uint64_t)3)];
bit_t_seq_table[i][1] = s_H[((i >> 4)&(uint64_t)3)];
bit_t_seq_table[i][2] = s_H[((i >> 2)&(uint64_t)3)];
bit_t_seq_table[i][3] = s_H[(i&(uint64_t)3)];
bit_t_seq_table_rc[i][0] = RC_CHAR(bit_t_seq_table[i][3]);
bit_t_seq_table_rc[i][1] = RC_CHAR(bit_t_seq_table[i][2]);
bit_t_seq_table_rc[i][2] = RC_CHAR(bit_t_seq_table[i][1]);
bit_t_seq_table_rc[i][3] = RC_CHAR(bit_t_seq_table[i][0]);
}
}
}
void init_UC_Read(UC_Read* r)
{