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backup for minimizer

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chhylp123
2022-09-28 11:16:09 -04:00
parent 236bc7b9ee
commit 20a7dac82a
7 changed files with 812 additions and 80 deletions
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Hash_Table.h
+13
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@@ -196,4 +196,17 @@ void gen_fake_cigar(Fake_Cigar* z, overlap_region *o, int64_t apend_be, k_mer_hi
int append_utg_inexact_overlap_region_alloc(overlap_region_alloc* list, overlap_region* tmp,
ma_utg_v *ua, int add_beg_end, void *km);
#define kv_pushp_cl(type, v, p) do { \
if ((v).length == (v).size) { \
(v).size = (v).size? (v).size<<1 : 2; \
(v).list = (type*)realloc((v).list, sizeof(type) * (v).size); \
} \
*(p) = &((v).list[(v).length++]); \
} while (0)
#define is_alnw(a) (((a).readID) == ((uint32_t)(0x7fffffff)))
#define is_pri_aln(a) ((((a).readID) == ((uint32_t)(0x7fffffff)))||((a).cnt >= (a).readID))
uint64_t lchain_dp_trace(k_mer_hit* a, int64_t a_n, int64_t max_lgap, double sgap_rate, int64_t sgap);
#endif