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update trio-binning

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chhylp123
2020-04-10 23:32:15 -04:00
parent ad1b79a6bb
commit 20c6c1d2e6
3 changed files with 17 additions and 31 deletions
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Purge_Dups.cpp
+1 -17
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@@ -3574,7 +3574,7 @@ uint32_t just_contain)
asg_t *purge_g = NULL;
purge_g = asg_init();
asg_t* nsg = ug->g;
uint32_t v, rId, uId, i, k, offset;
uint32_t v, rId, uId, i, offset;
ma_utg_t* reads = NULL;
// kvec_t_u64_warp u_vecs;
@@ -3600,22 +3600,6 @@ uint32_t just_contain)
asg_arc_t* p = NULL;
int r;
hap_alignment_struct_pip hap_buf;
/****************************may have bugs********************************/
for (v = 0; v < nsg->n_seq; ++v)
{
uId = v;
if(nsg->seq[uId].c != HAP_LABLE) continue;
reads = &(ug->u.a[uId]);
for (k = 0; k < reads->n; k++)
{
rId = reads->a[k]>>33;
read_g->seq[reads->a[k]>>33].c = HAP_LABLE;
}
}
/****************************may have bugs********************************/
for (v = 0; v < nsg->n_seq; v++)
{