From 220dbd2a5113d80f7e8426eef6fba6efeb959e46 Mon Sep 17 00:00:00 2001 From: Haoyu Cheng Date: Thu, 26 Dec 2019 16:13:07 -0500 Subject: [PATCH] README --- README.md | 8 +++----- 1 file changed, 3 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 8803fc0..8bfb2ce 100644 --- a/README.md +++ b/README.md @@ -20,9 +20,7 @@ Hifiasm is a standalone and lightweight assembler, which does not need external |[Human CHM13]|3Gb|x27|-k 40 -t 42 -r 2|?|?|?|NA[2]/39.8Mb| |[Butterfly]|358Mb|x35|-k 40 -t 42 -r 2 -z 20|17.1h|36m|16G|7.5Mb/NA[3]| -[1] unitig N50 is the N50 of assembly graph with haplotype information (i.e., bubbles), while the contig N50 is the N50 of haplotype collapsed assembly (i.e., without bubbles). - -[2] CHM13 is a homozygous sample, so unitig N50 makes no sense. - -[3] Butterfly has high heterozygous rate, so most chromosomes have been fully separated into two haplotypes. In this case, contig N50 makes no sense. +[1] unitig N50 is the N50 of assembly graph with haplotype information (i.e., bubbles), while the contig N50 is the N50 of haplotype collapsed assembly (i.e., without bubbles). +[2] CHM13 is a homozygous sample, so unitig N50 makes no sense. +[3] Butterfly has high heterozygous rate, so most chromosomes have been fully separated into two haplotypes. In this case, contig N50 makes no sense.