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done chaining

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chhylp123
2022-10-08 14:51:03 -04:00
parent f92cef38f2
commit 2443e63ef5
4 changed files with 257 additions and 53 deletions
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Correct.cpp
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@@ -15342,7 +15342,7 @@ int64_t max_lgap)
for (k = 1, l = 0, pqn = 0; k <= a_n; k++) {
if(k == a_n || aln->a[l].qn != aln->a[k].qn) {
z = &(ol->list[aln->a[l].qn]); assert(z->align_length == l);
// fprintf(stderr, "[M::%s::] oid::[%lu, %u)\n", __func__, pqn, aln->a[l].qn);
for (pk = pqn; pk < aln->a[l].qn; pk++) ol->list[pk].w_list.n = 0;
pqn = aln->a[l].qn+1;