xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-09-15 12:47:57 +08:00
Code Issues Packages Projects Releases Wiki Activity

bug fix

Browse Source
This commit is contained in:
chhylp123
2021-05-02 14:16:36 -04:00
parent 9c205c8271
commit 24e5453781
6 changed files with 90 additions and 29 deletions
Download Patch File Download Diff File Expand all files Collapse all files

15
hic.cpp
View File

@@ -15410,6 +15410,20 @@ void resolve_tangles_hic(ha_ug_index *idx, bubble_type *bub, kvec_pe_hit *hits,
ta->idx.n = ta->n = 0;
}
void print_kv_u_trans_t(kv_u_trans_t *ta)
{
uint32_t i;
u_trans_t *p = NULL;
for (i = 0; i < ta->n; i++)
{
p = &(ta->a[i]);
fprintf(stderr, "q-utg%.6ul\tqs(%u)\tqe(%u)\tt-utg%.6ul\tts(%u)\tte(%u)\trev(%u)\tw(%f)\tf(%u)\n",
p->qn+1, p->qs, p->qe, p->tn+1, p->ts, p->te, p->rev, p->nw, p->f);
}
fprintf(stderr, "[M::%s::] \n", __func__);
}
int hic_short_align(const enzyme *fn1, const enzyme *fn2, ha_ug_index* idx)
{
double index_time = yak_realtime();
@@ -15434,6 +15448,7 @@ int hic_short_align(const enzyme *fn1, const enzyme *fn2, ha_ug_index* idx)
///debug_hc_hits_v14(&sl.hits, asm_opt.output_file_name, sl.idx);
////dedup_hits(&(sl.hits), sl.idx);
///write_hc_hits_v14(&sl.hits, asm_opt.output_file_name);
// print_kv_u_trans_t(&(idx->t_ch->k_trans));
hc_links link;
init_hc_links(&link, idx->ug->g->n_seq, idx->t_ch);