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r499->false duplications

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chhylp123
2023-01-17 04:49:56 -05:00
parent 46391eba26
commit 25d6857d44
9 changed files with 641 additions and 65 deletions
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Trio.cpp
+21
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@@ -349,6 +349,27 @@ static void ha_triobin_list(const hifiasm_opt_t *opt)
fprintf(stderr, "[M::%s::%.3f*%.2f] ==> partitioned reads with external lists\n", __func__, yak_realtime(), yak_cpu_usage());
}
uint32_t test_yak_binning(char* fn, char *cmd)
{
gzFile fp; kstream_t *ks; kstring_t str = {0,0,0};
int dret, eq = 0; fp = gzopen(fn, "r");
if (fp == 0) return eq;
ks = ks_init(fp);
if(ks_getuntil(ks, KS_SEP_LINE, &str, &dret) >= 0) {
uint64_t sl = strlen(str.s), z;
for (z = 0; (z < sl) && (str.s[z]!='\t'); z++);
if(((z+1)<sl) && (str.s[z]=='\t')) {
if((strlen(str.s+z+1)==strlen(cmd)) && (!memcmp(str.s+z+1, cmd, strlen(cmd)))) {
eq = 1;
}
}
}
free(str.s);
ks_destroy(ks);
gzclose(fp);
return eq;
}
inline void phrase_hstatus(char *s, char **rname, uint32_t *hid)
{
char *p = NULL, *id = NULL; *rname = NULL; *hid = (uint32_t)-1;