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block phasing

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chhylp123
2021-04-21 10:58:58 -04:00
parent 475ebb8075
commit 278efaa876
4 changed files with 616 additions and 67 deletions
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rcut.h
+30 -1
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@@ -43,6 +43,35 @@ typedef struct {
mc_match_t* e;
}mc_g_t;
typedef struct {
uint32_t a[2], occ[2];
mc_node_t s[2];
t_w_t z[4];
}mb_node_t;
typedef struct {
kvec_t(uint32_t) bid;
kvec_t(uint32_t) idx;
kvec_t(mb_node_t) u;
}mb_nodes_t;
typedef struct {
uint64_t x; ///(uint64_t)nid1 << 32 | nid2;
t_w_t w[4]; ///might be negative or positive
} mb_edge_t;
typedef struct {
kvec_t(uint64_t) idx;
kvec_t(mb_edge_t) ma;
uint64_t* cc;
uint32_t n_seq;
} mb_match_t;
typedef struct {
mb_nodes_t* u;
mb_match_t* e;
}mb_g_t;
static inline uint64_t kr_splitmix64(uint64_t x)
{
uint64_t z = (x += 0x9E3779B97F4A7C15ULL);
@@ -58,5 +87,5 @@ static inline double kr_drand_r(uint64_t *x)
u.i = 0x3FFULL << 52 | (*x) >> 12;
return u.d - 1.0;
}
void mc_solve(hap_overlaps_list* ovlp, trans_chain* t_ch, kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g, double f_rate, uint8_t* trio_flag, uint32_t renew_s, int8_t *s, uint32_t is_sys, bubble_type* bub);
void mc_solve(hap_overlaps_list* ovlp, trans_chain* t_ch, kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g, double f_rate, uint8_t* trio_flag, uint32_t renew_s, int8_t *s, uint32_t is_sys, bubble_type* bub, mb_nodes_t* u);
#endif