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add scaffolding

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chhylp123
2023-10-10 12:40:29 -04:00
parent c7685e6f19
commit 281ae6ba89
7 changed files with 2312 additions and 147 deletions
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Overlaps.h
+1 -1
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@@ -1176,7 +1176,7 @@ void extract_sub_overlaps(uint32_t i_tScur, uint32_t i_tEcur, uint32_t i_tSpre,
uint32_t tn, kv_u_trans_hit_t* ktb, uint32_t bn);
void clean_u_trans_t_idx(kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g);
void clean_u_trans_t_idx_adv(kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g);
void clean_u_trans_t_idx_filter_adv(kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g);
void clean_u_trans_t_idx_filter_adv(kv_u_trans_t *ta, ma_ug_t *ug, asg_t *read_g, double sc_sec_rate, uint64_t uniform_only);
uint32_t test_dbug(ma_ug_t* ug, FILE* fp);
void write_dbug(ma_ug_t* ug, FILE* fp);
int asg_arc_identify_simple_bubbles_multi(asg_t *g, bub_label_t* x, int check_cross);