xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-09 06:28:13 +08:00
Code Issues Packages Projects Releases Wiki Activity

to replace get_new_candidates(); UNFINISHED!

Browse Source
This commit is contained in:
Heng Li
2020-03-27 11:21:08 -04:00
parent 7271c106e4
commit 293f4b6b58
7 changed files with 132 additions and 156 deletions
Download Patch File Download Diff File Expand all files Collapse all files
Makefile
+11 -11
View File
@@ -4,7 +4,7 @@ CPPFLAGS=
INCLUDES=
OBJS= Output.o CommandLines.o Process_Read.o Assembly.o Hash_Table.o \
POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o \
htab.o hist.o sketch.o sys.o
htab.o hist.o sketch.o anchor.o sys.o
EXE= hifiasm
LIBS= -lz -lpthread -lm
@@ -33,24 +33,24 @@ depend:
# DO NOT DELETE
Assembly.o: Assembly.h CommandLines.h Process_Read.h Overlaps.h kvec.h kdq.h
Assembly.o: kmer.h Hash_Table.h htab.h POA.h Correct.h Levenshtein_distance.h
Assembly.o: Hash_Table.h htab.h POA.h Correct.h Levenshtein_distance.h
Assembly.o: Output.h
CommandLines.o: CommandLines.h ketopt.h
Correct.o: Correct.h Hash_Table.h kmer.h Process_Read.h Overlaps.h kvec.h
Correct.o: kdq.h CommandLines.h htab.h Levenshtein_distance.h POA.h
Correct.o: Assembly.h
Hash_Table.o: Hash_Table.h kmer.h Process_Read.h Overlaps.h kvec.h kdq.h
Hash_Table.o: CommandLines.h htab.h Correct.h Levenshtein_distance.h POA.h
Hash_Table.o: ksort.h
Correct.o: Correct.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h
Correct.o: kdq.h CommandLines.h Levenshtein_distance.h POA.h Assembly.h
Hash_Table.o: Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h kdq.h
Hash_Table.o: CommandLines.h Correct.h Levenshtein_distance.h POA.h ksort.h
Levenshtein_distance.o: Levenshtein_distance.h
Output.o: Output.h CommandLines.h
Overlaps.o: Overlaps.h kvec.h kdq.h ksort.h Process_Read.h CommandLines.h
Overlaps.o: Hash_Table.h kmer.h htab.h Correct.h Levenshtein_distance.h POA.h
POA.o: POA.h Hash_Table.h kmer.h Process_Read.h Overlaps.h kvec.h kdq.h
POA.o: CommandLines.h htab.h Correct.h Levenshtein_distance.h
Overlaps.o: Hash_Table.h htab.h Correct.h Levenshtein_distance.h POA.h
POA.o: POA.h Hash_Table.h htab.h Process_Read.h Overlaps.h kvec.h kdq.h
POA.o: CommandLines.h Correct.h Levenshtein_distance.h
Process_Read.o: Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h
Trio.o: khashl.h kthread.h Process_Read.h Overlaps.h kvec.h kdq.h
Trio.o: CommandLines.h htab.h
anchor.o: htab.h Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h
anchor.o: ksort.h Hash_Table.h
hist.o: htab.h Process_Read.h Overlaps.h kvec.h kdq.h CommandLines.h
htab.o: kthread.h khashl.h kseq.h ksort.h htab.h Process_Read.h Overlaps.h
htab.o: kvec.h kdq.h CommandLines.h