From 29fe35eb214c31f689eb4bba3d469f0e62ea1bc0 Mon Sep 17 00:00:00 2001 From: Haoyu Cheng Date: Tue, 24 Dec 2019 10:37:40 -0500 Subject: [PATCH] remove debug information --- Overlaps.cpp | 44 ++++++++++++++++++++++---------------------- 1 file changed, 22 insertions(+), 22 deletions(-) diff --git a/Overlaps.cpp b/Overlaps.cpp index eac505d..ae59275 100644 --- a/Overlaps.cpp +++ b/Overlaps.cpp @@ -1435,13 +1435,13 @@ long long n_read, uint64_t* readLen, ma_sub_t* coverage_cut, float shift_rate) max_left.s = max_right.s = rLen; max_left.e = max_right.e = 0; - if(i == 5783410) - { - fprintf(stderr, "\n\npaf: \n"); - print_overlaps(&paf[i], rLen, interval_s, interval_e); - fprintf(stderr, "\n\nrev_paf: \n"); - print_overlaps(&rev_paf[i], rLen, interval_s, interval_e); - } + // if(i == 5783410) + // { + // fprintf(stderr, "\n\npaf: \n"); + // print_overlaps(&paf[i], rLen, interval_s, interval_e); + // fprintf(stderr, "\n\nrev_paf: \n"); + // print_overlaps(&rev_paf[i], rLen, interval_s, interval_e); + // } collect_sides(&(paf[i]), rLen, &max_left, &max_right); @@ -1453,21 +1453,21 @@ long long n_read, uint64_t* readLen, ma_sub_t* coverage_cut, float shift_rate) } - if(i == 5783410) - { - fprintf(stderr, "max_left.s: %d, max_left.e: %d, max_right.s: %d, max_right.e: %d\n", - max_left.s, max_left.e, max_right.s, max_right.e); - } + // if(i == 5783410) + // { + // fprintf(stderr, "max_left.s: %d, max_left.e: %d, max_right.s: %d, max_right.e: %d\n", + // max_left.s, max_left.e, max_right.s, max_right.e); + // } collect_contain(&(paf[i]), &(rev_paf[i]), rLen, &max_left, &max_right, 0.1); ///collect_contain(&(rev_paf[i]), rLen, &max_left, &max_right); - if(i == 5783410) - { - fprintf(stderr, "max_left.s: %d, max_left.e: %d, max_right.s: %d, max_right.e: %d\n", - max_left.s, max_left.e, max_right.s, max_right.e); - } + // if(i == 5783410) + // { + // fprintf(stderr, "max_left.s: %d, max_left.e: %d, max_right.s: %d, max_right.e: %d\n", + // max_left.s, max_left.e, max_right.s, max_right.e); + // } ////shift_rate should be (FINAL_OVERLAP_ERROR_RATE*2) @@ -1490,11 +1490,11 @@ long long n_read, uint64_t* readLen, ma_sub_t* coverage_cut, float shift_rate) continue; } - if(i == 5783410) - { - fprintf(stderr, "max_left.s: %d, max_left.e: %d, max_right.s: %d, max_right.e: %d\n", - max_left.s, max_left.e, max_right.s, max_right.e); - } + // if(i == 5783410) + // { + // fprintf(stderr, "max_left.s: %d, max_left.e: %d, max_right.s: %d, max_right.e: %d\n", + // max_left.s, max_left.e, max_right.s, max_right.e); + // } ///now max_left.e > max_right.s && max_left.e - max_right.s is small enough //[interval_s, interval_e)