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fix memory leak of print_utg

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chhylp123
2023-05-12 11:31:34 -04:00
parent 18b649aadb
commit 2c18ec30da
5 changed files with 53 additions and 19 deletions
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15
Process_Read.cpp
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@@ -714,6 +714,8 @@ void init_Debug_reads(Debug_reads* x, const char* file)
}
x->read_name = (char**)malloc(sizeof(char*)*x->query_num);
x->candidate_count = (kvec_t_u64_warp*)malloc(sizeof(kvec_t_u64_warp)*x->query_num);
x->read_id = NULL; MALLOC(x->read_id, x->query_num);
memset(x->read_id, -1, sizeof((*(x->read_id)))*x->query_num);
fseek(x->fp, 0, SEEK_SET);
i = 0;
@@ -732,6 +734,15 @@ void init_Debug_reads(Debug_reads* x, const char* file)
sprintf(Name_Buffer, "%s.debug.stdout", file);
x->fp = fopen(Name_Buffer,"w");
fprintf(stderr, "Print debugging information to: %s\n", Name_Buffer);
sprintf(Name_Buffer, "%s.debug.r0.fa", file);
x->fp_r0 = fopen(Name_Buffer,"w");
fprintf(stderr, "Print raw reads to: %s\n", Name_Buffer);
sprintf(Name_Buffer, "%s.debug.r1.fa", file);
x->fp_r1 = fopen(Name_Buffer,"w");
fprintf(stderr, "Print corrected reads to: %s\n", Name_Buffer);
free(Name_Buffer);
}
@@ -744,8 +755,8 @@ void destory_Debug_reads(Debug_reads* x)
kv_destroy(x->candidate_count[i].a);
}
free(x->read_name);
fclose(x->fp);
free(x->read_name); free(x->read_id);
fclose(x->fp); fclose(x->fp_r0); fclose(x->fp_r1);
}