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chhylp123
2022-11-10 19:37:52 -05:00
parent 46acc8a2f6
commit 2c7b164f11
11 changed files with 1919 additions and 111 deletions
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Overlaps.h
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@@ -1141,6 +1141,10 @@ int64_t count_edges_v_w(asg_t *g, uint32_t v, uint32_t w);
void renew_utg(ma_ug_t **ug, asg_t* read_g, kvec_asg_arc_t_warp* edge);
void merge_unitig_content(ma_utg_t* collection, ma_ug_t* ug, asg_t* read_g, kvec_asg_arc_t_warp* edge);
// void break_ug_contig(ma_ug_t **ug, asg_t *read_g, All_reads *RNF, ma_sub_t *coverage_cut,
// ma_hit_t_alloc* sources, R_to_U* ruIndex, kvec_asg_arc_t_warp* edge, int max_hang, int min_ovlp,
// int* b_low_cov, int* b_high_cov, double m_rate);
#define JUNK_COV 5
#define DISCARD_RATE 0.8