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apply coverage to purge_dups

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chhylp123
2020-07-06 10:02:03 -04:00
parent 428cc01d10
commit 2e56ef7db5
4 changed files with 368 additions and 19 deletions
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Purge_Dups.h
+5 -3
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@@ -6,10 +6,12 @@
#include "kdq.h"
#include "Overlaps.h"
#include "Hash_Table.h"
#define COV_COUNT 1024
void purge_dups(ma_ug_t *ug, asg_t *read_g, ma_sub_t* coverage_cut, ma_hit_t_alloc* reverse_sources,
R_to_U* ruIndex, kvec_asg_arc_t_warp* edge, float density, uint32_t purege_minLen, int max_hang,
int min_ovlp, long long bubble_dist, float drop_ratio, uint32_t just_contain);
void purge_dups(ma_ug_t *ug, asg_t *read_g, ma_sub_t* coverage_cut, ma_hit_t_alloc* sources,
ma_hit_t_alloc* reverse_sources, R_to_U* ruIndex, kvec_asg_arc_t_warp* edge, float density,
uint32_t purege_minLen, int max_hang, int min_ovlp, long long bubble_dist, float drop_ratio,
uint32_t just_contain);
void fill_unitig(uint64_t* buffer, uint32_t bufferLen, asg_t* read_g, kvec_asg_arc_t_warp* edge,
uint32_t is_circle, uint64_t* rLen);