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Heng Li
2020-03-24 21:57:23 -04:00
parent f70257c260
commit 3341cf20ba
5 changed files with 301 additions and 126 deletions
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Makefile
+4 -2
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@@ -4,7 +4,7 @@ CPPFLAGS=
INCLUDES=
OBJS= Output.o CommandLines.o Process_Read.o Assembly.o Hash_Table.o \
POA.o Correct.o Levenshtein_distance.o Overlaps.o Trio.o kthread.o \
yak-bbf.o yak-count.o yak-sys.o
yak-bbf.o yak-count.o hist.o sketch.o yak-sys.o
EXE= hifiasm
LIBS= -lz -lpthread -lm
@@ -52,9 +52,11 @@ POA.o: kvec.h kdq.h CommandLines.h yak.h Correct.h Levenshtein_distance.h
Process_Read.o: Process_Read.h kseq.h Overlaps.h kvec.h kdq.h CommandLines.h
Trio.o: khashl.h kthread.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h
Trio.o: CommandLines.h yak.h
hist.o: yak.h
kthread.o: kthread.h
main.o: CommandLines.h Process_Read.h kseq.h Overlaps.h kvec.h kdq.h
main.o: Assembly.h Levenshtein_distance.h
main.o: Assembly.h Levenshtein_distance.h yak.h
sketch.o: kvec.h yak.h
yak-bbf.o: yak.h
yak-count.o: CommandLines.h yak.h khashl.h kthread.h kseq.h
yak-sys.o: yak.h