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chhylp123
2022-07-24 18:13:16 -04:00
parent 138610b049
commit 33afa25398
5 changed files with 3581 additions and 41 deletions
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inter.cpp
+1 -14
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@@ -8913,18 +8913,9 @@ static void filter_short_ulalignments(void *data, long i, int tid) // callback f
const ma_ug_t *ug = (ma_ug_t *)data;
uc_block_t *a = NULL; uc_block_t *p; int64_t k, a_n; uint32_t z, fz, lz, l, bz;
a = UL_INF.a[i].bb.a; a_n = UL_INF.a[i].bb.n;
// if(i == 4) {
// fprintf(stderr, "[M::%s::i->%ld] a_n->%ld\n", __func__, i, a_n);
// }
for (k = a_n - 1; k >= 0; k--) {
p = &(a[k]);
// if(i == 27512) {
// fprintf(stderr, "+[M::%s::k->%ld::a_n->%ld] p->ts::%u, p->te::%u, p->pchain::%u, p->pidx::%u, p->aidx::%u, p->qs::%u, p->qe::%u\n",
// __func__, k, a_n, p->ts, p->te, p->pchain, p->pidx, p->aidx, p->qs, p->qe);
// }
// if(p->qs > p->qe) {
// fprintf(stderr, "[M::%s] id->%ld, qs->%u, qe->%u\n", __func__, i, p->qs, p->qe);
// }
if(p->base || (!p->el) || (!p->pchain)) continue;
if(p->pidx == (uint32_t)-1) {
if(!ugl_cover_check(p->ts, p->te, &(ug->u.a[p->hid]))) {
@@ -8956,10 +8947,6 @@ static void filter_short_ulalignments(void *data, long i, int tid) // callback f
for (k = a_n - 1; k >= 0; k--) {
p = &(a[k]);
// if(i == 27512) {
// fprintf(stderr, "-[M::%s::k->%ld::a_n->%ld] p->ts::%u, p->te::%u, p->pchain::%u, p->pidx::%u, p->aidx::%u, p->qs::%u, p->qe::%u\n",
// __func__, k, a_n, p->ts, p->te, p->pchain, p->pidx, p->aidx, p->qs, p->qe);
// }
if(p->base || (!p->el) || (!p->pchain)) continue;
if(p->pidx != (uint32_t)-1) {
assert(a[p->pidx].aidx == (uint32_t)k);