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coverage adjustment for polyploidy

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chhylp123
2023-03-12 17:02:29 -04:00
parent 2218bac8aa
commit 3407c7029e
7 changed files with 344 additions and 30 deletions
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hic.h
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@@ -95,6 +95,8 @@ void destory_bubbles(bubble_type* bub);
void identify_bubbles(ma_ug_t* ug, bubble_type* bub, uint8_t *r_het_flag, kv_u_trans_t *ref);
void identify_bubbles_recal(asg_t* sg, ma_ug_t* ug, bubble_type* bub, uint8_t *r_het_flag, ma_hit_t_alloc* sources, R_to_U* ruIndex,
kv_u_trans_t *ref);
void identify_bubbles_recal_poy(asg_t* sg, ma_ug_t* ug, bubble_type* bub, uint8_t *r_het_flag, ma_hit_t_alloc* sources, R_to_U* ruIndex,
kv_u_trans_t *ref);
void resolve_bubble_chain_tangle(ma_ug_t* ug, bubble_type* bub);
uint32_t connect_bub_occ(bubble_type* bub, uint32_t root_id, uint32_t check_het);
void get_bub_id(bubble_type* bub, uint32_t root, uint64_t* id0, uint64_t* id1, uint32_t check_het);