more cutting methods

2026-10-04 19:38:12 +08:00 · 2019-11-20 15:43:44 -05:00
parent e8ff0c1dbc
commit 3425bd020b
6 changed files with 660 additions and 118 deletions
@@ -1230,7 +1230,7 @@ void correct_overlap(overlap_region_alloc* overlap_list, All_reads* R_INF,
                        long long* potiental_matched_overlap_0, long long* potiental_matched_overlap_1,
                        Cigar_record* current_cigar, haplotype_evdience_alloc* hap,
                        Round2_alignment* second_round, int force_repeat, int is_consensus,
-                        int* fully_cov);
+                        int* fully_cov, int* abnormal);
 void init_Correct_dumy(Correct_dumy* list);
 void destory_Correct_dumy(Correct_dumy* list);
 void clear_Correct_dumy(Correct_dumy* list, overlap_region_alloc* overlap_list);