xxay/hifiasm
1
0
Fork 0
mirror of https://github.com/chhylp123/hifiasm.git synced 2026-10-07 11:38:12 +08:00
Code Issues Packages Projects Releases Wiki Activity

fix scaf bugs

Browse Source
This commit is contained in:
chhylp123
2024-04-27 07:58:49 -04:00
parent 1ac574adc7
commit 358b090e20
5 changed files with 297 additions and 65 deletions
Download Patch File Download Diff File Expand all files Collapse all files
inter.h
+2 -1
View File
@@ -129,7 +129,8 @@ void dedup_contain_g(const ug_opt_t *uopt, asg_t *sg);
void trans_base_mmhap_infer(ma_ug_t *ug, asg_t *sg, ug_opt_t *uopt, kv_u_trans_t *res);
scaf_res_t *gen_contig_path(const ug_opt_t *uopt, asg_t *sg, ma_ug_t *ctg, ma_ug_t *ref);
void gen_contig_trans(const ug_opt_t *uopt, asg_t *sg, ma_ug_t *qry, scaf_res_t *qry_sc, ma_ug_t *ref, scaf_res_t *ref_sc, ma_ug_t *gfa, kv_u_trans_t *ta, uint32_t qoff, uint32_t toff, bubble_type *bu, kv_u_trans_t *res);
void gen_contig_self(const ug_opt_t *uopt, asg_t *sg, ma_ug_t *db, scaf_res_t *db_sc, ma_ug_t *gfa, kv_u_trans_t *ta, uint64_t soff, bubble_type *bu, kv_u_trans_t *res);
void gen_contig_self(const ug_opt_t *uopt, asg_t *sg, ma_ug_t *db, scaf_res_t *db_sc, ma_ug_t *gfa, kv_u_trans_t *ta, uint64_t soff, bubble_type *bu, kv_u_trans_t *res, uint32_t is_exact);
void order_contig_trans(kv_u_trans_t *in);
void sort_uc_block_qe(uc_block_t* a, uint64_t a_n);
#endif