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better seeding

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chhylp123
2021-08-22 09:53:34 -04:00
parent bfff640a82
commit 37b07e4d33
15 changed files with 637 additions and 406 deletions
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CommandLines.cpp
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@@ -154,6 +154,7 @@ void init_opt(hifiasm_opt_t* asm_opt)
asm_opt->k_mer_length = 51;
asm_opt->hic_mer_length = 31;
asm_opt->mz_win = 51;
asm_opt->mz_rewin = 1000;
asm_opt->mz_sample_dist = 500;
asm_opt->bf_shift = 37;
asm_opt->max_kmer_cnt = 2000;